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Invoice process - MS Dynamics CRM or NAV?

Hello,

We've bought recently MS CRM and MS NAV.   We are a little bit confused because we are able to do our invoice inside CRM or in NAV.   Our situation is that we have a very complex pricing/discount structure with multiple marketing campaign and we have 30 clinics across US.  

Some vendor told us that it is better to do it inside NAV and some others in CRM.    Is there anybody that can tell me why it should be better to develop our invoice process inside NAV instead of CRM or vice-versa?  

Thanks

FGGM

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